| Filename | Total | Flagged As Poor Quality | Sequence Length | %GC |
|---|---|---|---|---|
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_80_Fem_R1.fastq.gz | 35,207,030 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_80_Fem_R2.fastq.gz | 35,207,030 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_81_Fem_R1.fastq.gz | 35,203,765 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_81_Fem_R2.fastq.gz | 35,203,765 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_84_Fem_R1.fastq.gz | 34,329,340 | 0 | 150-150 | 52 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_84_Fem_R2.fastq.gz | 34,329,340 | 0 | 150-150 | 52 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_89_Fem_R1.fastq.gz | 37,144,975 | 0 | 150-150 | 46 |
| Ps2Ex3M1_Heter_6month_07_07_2016_F3_89_Fem_R2.fastq.gz | 37,144,975 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_78_Fem_R1.fastq.gz | 35,271,163 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_78_Fem_R2.fastq.gz | 35,271,163 | 0 | 150-150 | 46 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_82_Fem_R1.fastq.gz | 31,423,430 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_82_Fem_R2.fastq.gz | 31,423,430 | 0 | 150-150 | 46 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_83_Fem_R1.fastq.gz | 33,701,029 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_83_Fem_R2.fastq.gz | 33,701,029 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_85_Fem_R1.fastq.gz | 34,855,462 | 0 | 150-150 | 47 |
| Ps2Ex3M1_Hom_6month_07_07_2016_F3_85_Fem_R2.fastq.gz | 34,855,462 | 0 | 150-150 | 47 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_79_Fem_R1.fastq.gz | 27,979,654 | 0 | 150-150 | 47 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_79_Fem_R2.fastq.gz | 27,979,654 | 0 | 150-150 | 47 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_86_Fem_R1.fastq.gz | 32,642,121 | 0 | 150-150 | 47 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_86_Fem_R2.fastq.gz | 32,642,121 | 0 | 150-150 | 46 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_88_Fem_R1.fastq.gz | 34,587,957 | 0 | 150-150 | 48 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_88_Fem_R2.fastq.gz | 34,587,957 | 0 | 150-150 | 48 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_95_Fem_R1.fastq.gz | 32,013,598 | 0 | 150-150 | 46 |
| Ps2Ex3M1_WT_6month_07_07_2016_F3_95_Fem_R2.fastq.gz | 32,013,598 | 0 | 150-150 | 46 |
Library Sizes ranged between 27,979,654 and 37,144,975 reads.
Read totals for each library. Duplicated reads are conventionally an high overestimate at this point.
Summary of FastQC flags for each parameter
Heatmap showing mean base qualities for each library
Heatmap showing mean sequence qualities for each library
Heatmap of summed base distributions along each read
GC Content Heatmap normalised to theoretical GC content in the Drerio Transcriptome
GC Content Distributions for all reads showing theoretical GC content from the Drerio Transcriptome
Universal Adapter Content
Total overrepresented sequences for each library
| Sequence | Total | Present In | Overall Percentage | Max_Percentage | Possible_Source |
|---|---|---|---|---|---|
| GGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCATC | 3,339,092 | 12 | 0.41288653% | 1.0877472% | No Hit |
| GTGGGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGC | 3,315,886 | 12 | 0.41001705% | 1.7212301% | No Hit |
| CTCCTGAAAAGGTTGTATCCTTTGTTAAAGGGGCTGTACCCTCTTTAACT | 3,115,607 | 11 | 0.38525209% | 1.1064811% | No Hit |
| CGAGAGGCTCTAGTTGATATACTACGGCGTAAAGGGTGGTTAAGGAACAA | 2,868,527 | 12 | 0.35470007% | 1.0066840% | No Hit |
| CTGGGGGAGCGGCCGCCCCGCGGCGCCCCCTCTCGTTCCCGTCTCCGGAG | 2,624,978 | 10 | 0.32458466% | 1.6869389% | No Hit |
| GTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCATCT | 2,393,631 | 12 | 0.29597807% | 0.7904521% | No Hit |
| CCGCTGTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATCC | 2,260,750 | 12 | 0.27954702% | 1.3219363% | No Hit |
| CCTCCTTCAAGTATTGTTTCATGTTACATTTTCGTATATTCTGGGGTAGA | 2,190,300 | 12 | 0.27083571% | 0.8235987% | No Hit |
| GGGCCTCTAGCATCTAAAAGCGTATAACAGTTAAAGGGCCGTTTGGCTTT | 1,834,366 | 11 | 0.22682364% | 0.6824629% | No Hit |
| GGCCCGGCGCACGTCCAGAGTCGCCGCCGCACACCGCAGCGCATCCCCCC | 1,833,990 | 9 | 0.22677715% | 1.3068238% | No Hit |
| GGCCCGGCGCACGTCCAGAGTCGCCGCCGCGCACCGCAGCGCATCCCCCC | 1,726,933 | 10 | 0.21353930% | 1.0327696% | No Hit |
| CCCGCTGTATTACTCAGGCTGCACTGCAGTGTCTATTCACAGGCGCGATC | 1,415,136 | 12 | 0.17498487% | 0.7909444% | No Hit |
| CTGGGAGATGAATAAAAGTTCAGCTTCGTACACCCCAAATTAAAAAATTA | 1,331,991 | 10 | 0.16470380% | 0.4751368% | No Hit |
| GGCCTCTAGCATCTAAAAGCGTATAACAGTTAAAGGGCCGTTTGGCTTTA | 1,327,074 | 10 | 0.16409580% | 0.5252067% | No Hit |
| GGGGGAGCGGCCGCCCCGCGGCGCCCCCTCTCGTTCCCGTCTCCGGAGCG | 1,283,696 | 9 | 0.15873201% | 0.8684758% | No Hit |
| GGGTTCAGGTAATTAATTTAAAGCTACTTTCGTGTTTGGGCCTCTAGCAT | 1,238,093 | 12 | 0.15309309% | 0.7816557% | No Hit |
| GGGGTGTACGAAGCTGAACTTTTATTCATCTCCCAGACAACCAGCTATTG | 1,195,276 | 12 | 0.14779867% | 1.0729480% | No Hit |
| GCCCACTACGACAACGTGTTTTGTAAATTATGATCTTTATTCTCCTGAAA | 1,153,870 | 10 | 0.14267872% | 0.4318004% | No Hit |
| CAGTGGCGTGCGCCTGTAATCCAAGCTACTGGGAGGCTGAGGCTGGCGGA | 1,108,764 | 11 | 0.13710126% | 0.6433564% | No Hit |
| CGGGTCGGGTGGGTGGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGG | 1,081,549 | 12 | 0.13373606% | 0.7325573% | No Hit |
| GCCTATTTAACTTAGGGCCAACCCGTCTCTGTGGCAATAGAGTGGGAAGA | 976,789 | 12 | 0.12078224% | 0.4683734% | No Hit |
| CTCCTTCAAGTATTGTTTCATGTTACATTTTCGTATATTCTGGGGTAGAA | 966,254 | 10 | 0.11947956% | 0.3931156% | No Hit |
| CTTAGACGACCTGGTAGTCCAAGGCTCCCCCAGGAGCACCATATCGATAC | 949,672 | 11 | 0.11742916% | 0.5371236% | No Hit |
| GAAGAAATTCATAATTCTGACAATAATATCTTACTTCCCTAAAAATACCA | 937,910 | 10 | 0.11597476% | 0.3691791% | No Hit |
| ATAAAAGTTCAGCTTCGTACACCCCAAATTAAAAAATTAAATTTAATTTA | 926,299 | 9 | 0.11453904% | 0.4176627% | No Hit |
| GGGGTAACGATGTCTGTTGTGGATTTTTCTCAGTTTTTAACTCACATTGC | 909,247 | 10 | 0.11243052% | 0.3494484% | No Hit |
| AGCTGGGGAGATCCGCGAGAAGGGCCCGGCGCACGTCCAGAGTCGCCGCC | 886,590 | 11 | 0.10962893% | 0.5268700% | No Hit |
| CTCTAGTTGATATACTACGGCGTAAAGGGTGGTTAAGGAACAATGTAAAA | 877,203 | 12 | 0.10846820% | 0.4243199% | No Hit |
| GGTCGGGTGGGTGGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGGAC | 865,450 | 11 | 0.10701491% | 0.4498572% | No Hit |
| GGGTGGGTGGCCGGCATCACCGCGGACCTCGGGCGCCCTTTTGGACGTGG | 815,363 | 10 | 0.10082154% | 0.4953081% | No Hit |
R version 3.6.1 (2019-07-05)
Platform: x86_64-pc-linux-gnu (64-bit)
locale: LC_CTYPE=en_AU.UTF-8, LC_NUMERIC=C, LC_TIME=en_AU.UTF-8, LC_COLLATE=en_AU.UTF-8, LC_MONETARY=en_AU.UTF-8, LC_MESSAGES=en_AU.UTF-8, LC_PAPER=en_AU.UTF-8, LC_NAME=C, LC_ADDRESS=C, LC_TELEPHONE=C, LC_MEASUREMENT=en_AU.UTF-8 and LC_IDENTIFICATION=C
attached base packages: parallel, stats, graphics, grDevices, utils, datasets, methods and base
other attached packages: readr(v.1.3.1), stringr(v.1.4.0), magrittr(v.1.5), scales(v.1.1.0), pander(v.0.6.3), kableExtra(v.1.1.0), dplyr(v.0.8.3), ngsReports(v.1.1.4), tibble(v.2.1.3), ggplot2(v.3.2.1) and BiocGenerics(v.0.32.0)
loaded via a namespace (and not attached): bitops(v.1.0-6), matrixStats(v.0.55.0), lubridate(v.1.7.4), webshot(v.0.5.1), RColorBrewer(v.1.1-2), httr(v.1.4.1), GenomeInfoDb(v.1.22.0), tools(v.3.6.1), backports(v.1.1.5), R6(v.2.4.1), lazyeval(v.0.2.2), colorspace(v.1.4-1), withr(v.2.1.2), tidyselect(v.0.2.5), compiler(v.3.6.1), rvest(v.0.3.5), Biobase(v.2.46.0), Cairo(v.1.5-10), flashClust(v.1.01-2), xml2(v.1.2.2), DelayedArray(v.0.12.0), plotly(v.4.9.1), ggdendro(v.0.1-20), labeling(v.0.3), digest(v.0.6.22), Rsamtools(v.2.2.1), rmarkdown(v.1.17), XVector(v.0.26.0), pkgconfig(v.2.0.3), htmltools(v.0.4.0), fastmap(v.1.0.1), FactoMineR(v.1.42), highr(v.0.8), htmlwidgets(v.1.5.1), rlang(v.0.4.1), rstudioapi(v.0.10), shiny(v.1.4.0), farver(v.2.0.1), zoo(v.1.8-6), hwriter(v.1.3.2), jsonlite(v.1.6), crosstalk(v.1.0.0), BiocParallel(v.1.20.0), RCurl(v.1.95-4.12), GenomeInfoDbData(v.1.2.2), leaps(v.3.0), Matrix(v.1.2-17), Rcpp(v.1.0.3), munsell(v.0.5.0), S4Vectors(v.0.24.0), lifecycle(v.0.1.0), scatterplot3d(v.0.3-41), stringi(v.1.4.3), yaml(v.2.2.0), MASS(v.7.3-51.4), SummarizedExperiment(v.1.16.0), zlibbioc(v.1.32.0), plyr(v.1.8.4), grid(v.3.6.1), promises(v.1.1.0), crayon(v.1.3.4), lattice(v.0.20-38), Biostrings(v.2.54.0), hms(v.0.5.2), zeallot(v.0.1.0), knitr(v.1.26), pillar(v.1.4.2), GenomicRanges(v.1.38.0), reshape2(v.1.4.3), stats4(v.3.6.1), glue(v.1.3.1), evaluate(v.0.14), ShortRead(v.1.44.0), latticeExtra(v.0.6-28), data.table(v.1.12.6), httpuv(v.1.5.2), vctrs(v.0.2.0), gtable(v.0.3.0), purrr(v.0.3.3), tidyr(v.1.0.0), assertthat(v.0.2.1), xfun(v.0.11), mime(v.0.7), xtable(v.1.8-4), later(v.1.0.0), viridisLite(v.0.3.0), truncnorm(v.1.0-8), GenomicAlignments(v.1.22.1), IRanges(v.2.20.0), cluster(v.2.1.0) and ellipsis(v.0.3.0)